Stir in the sherry vinegar and remove from the heat. Place one cooked potato into each muffin cup.
Bake the potato cups for 18 to 20 minutes, or until the surfaces appear dry and the edges begin to turn golden and crisp. Remove from the oven and switch the oven setting to broil.
Spoon a small amount of caramelized onions into each potato cup, dividing the mixture evenly among all cups.
Place the muffin tin under the broiler and cook for about 4 minutes, or until the cheese is melted, bubbling, and lightly browned. Remove carefully and garnish with fresh thyme leaves if desired. Serve warm.